Overlap SS

usage: overlap_ss [-h] [-q] genome rna_file_1 rna_file_2

Looks for overlaps of two classes of RNA on the same strand of DNA

positional arguments:
  genome    FASTA file containing the genome of the organism
  rna_file_1   File containing the RNA to use as a base
  rna_file_2   File containing the RNA to look for overlaps with

optional arguments:
  -h, --help   show this help message and exit
  -q, --quiet  Suppress output from intermediate commands